Package index • openMSE

All functions

At_Age_TS_Variables: At-Age Time Series Variables

TS_Variables: Time Series Variables

demo(): Run an example MSE

get_Assess_Estimates(): Create a data.frame with estimated values from a SAMtool assessment method used in an MSE

get_LifeHistory(): Get Life History Parameters

get_Metadata(): Extract the meta-data from a Hist or MSE object

get_Years(): Create a data.frame with Historical and Projection years

get_at_Age(): Create a data.frame with at-age schedules by simulation and year

get_at_Length(): Create a data.frame with at-length selectivity and retention schedules by simulation and year

get_at_age_ts(): Create a data.frame with time-series information by simulation and year

get_ts() valid_ts_variables() valid_at_age_ts_variables() get_Biomass() get_Landings() get_Removals() get_Recruits() get_SSB() get_SB_SBMSY() get_F() get_Biomass_at_Age() get_Number_at_Age() get_SSB_at_Age(): Create a data.frame with time-series information by simulation and year

plot_TS() plot_SSB() plot_Biomass() plot_Landings() plot_Removals() plot_Recruits() plot_F() plot_LifeHistory(): Plots the median and quantiles of a time-series

plot_at_Age() plot_Length() plot_Weight() plot_Maturity() plot_N.Mortality() plot_Select() plot_Retention() plot_Select_Maturity(): Plot at-Age schedules

lb2kg() lb2mt() kg2lb() kg2_1000lb() kg2mt() inch2mm() inch2cm() mm2inch() cm2inch() divide_1000() divide_100() divide_10() multiply_1000() multiply_100() multiply_10(): Convert numeric values to a different scale

theme_default(): A ggplot2 theme

userguide(): Open the openMSE Documentation website